
•19 ulcerative colitis patients in clinical and endoscopic remission and 19 controls were studied. A computer based image processing technique was applied to construct 20 mosaicing image sets from each subject. Remitting patients were sub-grouped into either inactive or quiescent disease according to histology.

•Pericrypt fluorescence (p<0.01), crypt diameter (p<0.05) but not intercrypt distance (p = 0.07) were significantly increased in ulcerative colitis patients compared to controls. Patients with inactive disease showed a significant increase in fluorescence leakage (median fluorescence (IQR), 3888 (3560–4240) vs. 2696 (2502–3390), p<0.01), crypt diameter (median diameter (IQR), 92.5 (85.5–101) vs. 73 (70–77), p<0.05) and intercrypt distance (median distance (IQR), 82.5 (70.5–91.2) vs. 66 (59.5–73.5), p<0.05) compared to those with quiescent disease. A composite outcome score combining fluorescence leakage and crypt diameter was able to predict a disease flare during a 12 month follow-up period (p<0.01).